stackepi {epistack}R Documentation

epistack example and test dataset

Description

DNA methylation profiles (from MBD-seq data) arround transcription start sites of the 693 chr18 genes annotated on the pig genome (Sscrofa11.1), as well as gene expression levels in Transcript Per Million (TPM) measured by RNA-seq in the same duodenum sample.

Usage

data("stackepi")

Format

A GRanges of the 693 rows and 54 metadata columns

Source

This dataset was generated from ENSEMBL annotation data and data generated by our lab (publicly available soon).


[Package epistack version 1.0.0 Index]