mappedReads {epigenomix} | R Documentation |
The GRangesList
contains two elements:
"CEBPA_WT_1" and "CEBPA_KO_1". Both list elements are
GRanges
objects storing mapped reads
from anti-H3K4me3 ChIP-seq experiments. The first sample was a
wild-type mouse cell line. The second sample was obtained from
the same cell line after CEPBA knock-out.
data(mappedReads)
A GRangesList
with two
GRanges
.
Duplicated reads and reads mapping to more than one genomic location were removed. Reads were extended to the estimated DNA fragment size of 200bp towards the 3 prime end. Further, only reads lying within certain regions of chromomse 1 were kept to reduce storage space.
data(mappedReads) names(mappedReads) mappedReads[[1]]