build_study {edge} | R Documentation |
build_study
generates the full and null models for users unfamiliar
with building models in R. There are two types of experimental designs:
static and time-course. For more details, refer to the vignette.
build_study(data, grp = NULL, adj.var = NULL, bio.var = NULL, tme = NULL, ind = NULL, sampling = c("static", "timecourse"), basis.df = 2, basis.type = c("ncs", "poly"))
data |
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grp |
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adj.var |
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bio.var |
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tme |
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ind |
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sampling |
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basis.df |
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basis.type |
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deSet
object
John Storey, Andy Bass
# create ExpressionSet object from kidney dataset library(splines) data(kidney) age <- kidney$age sex <- kidney$sex kidexpr <- kidney$kidexpr # create deSet object from data de_obj <- build_study(data = kidexpr, adj.var = sex, tme = age, sampling = "timecourse", basis.df = 4)