loops.small {diffloop}R Documentation

chr1:36000000-36300000 loops

Description

A loops object containing unique 108 loops with 27 anchors for 6 samples and corresponding colData/rowData

Usage

loops.small

Format

A small loops object

anchors

GRanges object of anchor locations

loops

indexes of interactions

samples

Two replicates each of jurkat, naive, and primed cells

colData

Groups identifying cell type and unnormalized sizeFactors

rowData

Base initialization with only loopWidth values

...

Value

A loops object

Source

subsetRegion(loops,GRanges(c('1'),IRanges(c(36000000),c(36300000))))


[Package diffloop version 1.22.0 Index]