subsetRegionAB {diffloop} | R Documentation |
subsetRegionAB
returns a loops object where one anchor
maps to regionA and the other maps to region B
subsetRegionAB(dlo, regionA, regionB) ## S4 method for signature 'loops,GRanges,GRanges' subsetRegionAB(dlo, regionA, regionB)
dlo |
A loops object |
regionA |
A GRanges object |
regionB |
A GRanges object |
A loops object
# Return the width for loops library(GenomicRanges) rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/') load(rda) regA <- GRanges(c('1'),IRanges(c(36000000),c(36100000))) regB <- GRanges(c('1'),IRanges(c(36200000),c(36300000))) splits <- subsetRegionAB(loops.small, regA, regB)