loops-class {diffloop} | R Documentation |
A class to represent ChIA-PET interaction data and annotations
anchors
A GRanges object describing loop anchor locations
interactions
A matrix. Each row is an interaction between two anchors
counts
A matrix with the number paired-end reads per loop per sample
colData
A data.frame with features (colums) for each sample (rows)
rowData
A data.frame with features (columns) for each loop (rows)