ddCtExpression-class {ddCt} | R Documentation |
This class is a subclass of ExpressionSet
and
represents objects which are produced
by the ddCt algorithm in the ddCtExpression
method
Class ExpressionSet
, directly.
Class eSet
, by class "ExpressionSet", distance 2.
Class VersionedBiobase
, by class "ExpressionSet", distance 3.
Class Versioned
, by class "ExpressionSet", distance 4.
signature(object = "ddCtExpression")
: returns the
Ct value of this ddCtExpressionobject
signature(object = "ddCtExpression")
: returns
the error number of the Ct value of this ddCtExpressionobject
signature(object = "ddCtExpression")
: returns the
dCt value of this ddCtExpressionobject
signature(object = "ddCtExpression")
: returns
the error number of the dCt value of this ddCtExpressionobject
signature(object = "ddCtExpression")
:returns the
ddCt value of this ddCtExpressionobject
signature(object = "ddCtExpression")
: returns
the error number of the ddCt value of this ddCtExpressionobject
signature(object = "ddCtExpression")
: returns
the levels in this ddCtExpressionobject
signature(object = "ddCtExpression")
: returns
the error number of the levens in this ddCtExpressionobject
signature(object = "ddCtExpression")
: returns
the Ct number of this ddCtExpressionobject
signature(object = "ddCtExpression")
: returns
the NA number of this ddCtExpressionobject
signature(object = "ddCtExpression")
: returns a
data frame which represents this expression object
signature(object = "ddCtExpression", file =
"character")
: writes ddCtExpression object into a file
Rudolf Biczok mailto:r.biczok@dkfz.de
SDMFrame
: reader for SDM files
elist
, elistWrite
: utility functions for
ddCtExpression objects
ddCtExpression
: the method which invokes the ddCt algorithm
## read a SDM file sampdat <- SDMFrame(system.file("extdata", "Experiment1.txt", package="ddCt")) ## call ddCtExpression method to get a ddCt calculated expression result <- ddCtExpression(sampdat, calibrationSample="Sample1", housekeepingGenes=c("Gene1","Gene2")) ## use getter methods ddCt(result) ddCtErr(result)