CuffSet-class {cummeRbund} | R Documentation |
A 'pointer' class to connect to, and retrieve data from the SQLite backend database.
Objects can be created by calls of the form new("CuffSet", DB, conditions, genes, isoforms, TSS, CDS, promoters, splicing, relCDS, ...)
.
Available methods are primary accessors to retrieve CuffGeneSet or CuffGene objects for manipulation.
DB
:Object of class "SQLiteConnection"
~~
conditions
:Object of class "data.frame"
~~
genes
:Object of class "CuffData"
~~
isoforms
:Object of class "CuffData"
~~
phenoData
:Object of class "data.frame"
~~
TSS
:Object of class "CuffData"
~~
CDS
:Object of class "CuffData"
~~
promoters
:Object of class "CuffDist"
~~
splicing
:Object of class "CuffDist"
~~
relCDS
:Object of class "CuffDist"
~~
conditions
:Object of class "data.frame"
~~
signature(x = "CuffSet")
: ...
signature(object="CuffSet")
: Access @DB slot
signature(object = "CuffSet")
: Access @genes slot
signature(object = "CuffSet")
: Access @isoforms slot
signature(object = "CuffSet")
: Access @TSS slot
signature(object = "CuffSet")
: Access @CDS slot
signature(object = "CuffSet")
: Access @promoters slot
signature(object = "CuffSet")
: Access @splicing slot
signature(object = "CuffSet")
: Access @relCDS slot
signature(object = "CuffSet")
: Access varModel info
None.
Loyal A. Goff
None.
None.
showClass("CuffSet")