csBoxplot {cummeRbund} | R Documentation |
Creates a ggplot2 plot object with a geom_box layer displaying summary statistics for FPKM values across samples (x).
## S4 method for signature 'CuffData' csBoxplot(object, logMode=TRUE, pseudocount=0.0001, replicates=FALSE,...)
object |
An object of class CuffData. |
logMode |
A logical argument to log10 -transform FPKM values. |
pseudocount |
Value added to FPKM to avoid log-transform issues. |
replicates |
A logical value whether or not to plot individual replicates or aggregate condition values. |
... |
Additional arguments to csBoxplot |
None
A ggplot2 plot object with a geom_box layer.
None
Loyal A. Goff
None
a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Read cufflinks data and create CuffSet object genes<-a@genes #CuffData object for all genes csBoxplot(genes)