makeMonocle {ctgGEM} | R Documentation |
This function, called by generate_tree
, creates a cell tree
using the monocle package. This function utilizes code
from the monocle vignette R script.
makeMonocle(dataSet, outputDir = NULL)
dataSet |
a ctgGEMset object |
outputDir |
the directory where output should be saved, defaults to
the temporary location returned by |
an updated ctgGEMset object