getDomainInflections {compartmap} | R Documentation |
A wrapper function to generate a GRanges object of chromatin domain inflection points
getDomainInflections( gr, what = "score", res = 1e+06, chrs = c(paste0("chr", 1:22), "chrX"), genome = c("hg19", "hg38", "mm9", "mm10") )
gr |
Input GRanges object with mcols column corresponding to chromatin domains |
what |
The name of the column containing the chromatin domain information |
res |
What resolution the domains were called |
chrs |
Which chromosomes to work on |
genome |
Which genome does the input data come from |
A GRanges object of compartment inflection points
data("k562_scrna_chr14", package = "compartmap") chr14_domains <- scCompartments(k562_scrna_chr14, res = 1e6, genome = "hg19", group = TRUE, bootstrap = FALSE) chr14_domain_inflections <- getDomainInflections(chr14_domains, what = "pc")