transformTFIDF {compartmap}R Documentation

Transform/normalize compartment calls using TF-IDF

Description

Transform/normalize compartment calls using TF-IDF

Usage

transformTFIDF(obj, scale.factor = 1e+05)

Arguments

obj

n x p input matrix (n = samples/cells; p = compartments)

scale.factor

Scaling factor for the term-frequency (TF)

Value

A TF-IDF transformed matrix of the same dimensions as the input

Examples


m <- 1000
n <- 100
mat <- round(matrix(runif(m*n), m, n))
#Input needs to be a tall matrix
tfidf <- transformTFIDF(mat)


[Package compartmap version 1.12.0 Index]