convPlot {combi} | R Documentation |
Plot the convegrence of the different parameter estimates in a line plot
convPlot(model, latent = is.null(View), nVars = Inf, Dim = 1L, View = NULL, size = 0.125)
model |
A fitted modelDI object |
latent |
A boolean, should latent variable trajectory be plotted |
nVars |
An integer, the number of variables to plot. By default all are plotted |
Dim |
An integer, the dimension to be plotted |
View |
An integer or character string, indicating the view to be plotted (if latent = FALSE) |
size |
The line size (see ?geom_path) |
A ggplot object containing the convergence plot
data(Zhang) #Unconstrained microMetaboInt = combi( list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo), distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE), logTransformGaussian = FALSE, verbose = TRUE) load(system.file("extdata", "zhangFits.RData", package = "combi")) convPlot(microMetaboInt) convPlot(microMetaboInt, Dim = 2) convPlot(microMetaboInt, View = "microbiome")