extractCoords {combi} | R Documentation |
Extract coordinates from fitted object
extractCoords(modelObj, Dim)
modelObj |
The fitted model |
Dim |
the required dimensions |
A list with components (matrices with two columns)
latentData |
The latent variables |
featureData |
The feature parameters |
varData |
The variables |
data(Zhang) #Unconstrained microMetaboInt = combi( list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo), distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE), logTransformGaussian = FALSE, verbose = TRUE) #Load the fits load(system.file("extdata", "zhangFits.RData", package = "combi")) extractCoords(microMetaboInt, Dim = c(1,2))