enrichMAplot {coRdon} | R Documentation |
Make an MA-like plot of enriched annotations, similar to the commonly used plots in differential expression analysis.
enrichMAplot(x, pvalue = "pvals", siglev = 0.05, size = 1, alpha = 1) ## S4 method for signature 'list' enrichMAplot(x, pvalue = "pvals", siglev = 0.05, size = 1, alpha = 1) ## S4 method for signature 'AnnotatedDataFrame' enrichMAplot(x, pvalue = "pvals", siglev = 0.05, size = 1, alpha = 1)
x |
|
pvalue |
Character, one of |
siglev |
Numeric, significance level to be used for plotting. |
size |
Numeric, size of points in plot. |
alpha |
Numeric, between 0 and 1, indicating points' transparency. |
A ggplot
object.
require(ggplot2) HD59_KO enrichMAplot(HD59_KO) enrichMAplot(HD59_KO, pvalue = "padj") enrichMAplot(HD59_KO, siglev = 0.01) enrichMAplot(HD59_KO, pvalue = "padj", siglev = 0.01) x <- list(disease = LD94_KO, healthy = HD59_KO) enrichMAplot(x)