plotEvalIc {cn.farms} | R Documentation |
Creates a plot with known regions and a numeric vector
plotEvalIc(object, segments, chrom, variable, ylim, ylab = "CN indicator", stripCol = "lightgray", regionCol = rgb(130, 0, 139, maxColorValue = 255), pointSize = 0.75, pointType = 4, bandwidth = c(0.01, 1000), nbin = 100)
object |
an instance of |
segments |
A data.frame with known regions. |
chrom |
the chromosome. |
variable |
The numeric vector which should be plotted. |
ylim |
the limits of the y axis. |
ylab |
the ylab from function par. |
stripCol |
color of points. |
regionCol |
color of regions. |
pointSize |
size of the points. |
pointType |
type of the points. |
bandwidth |
for the color of the plot. |
nbin |
number of bins for the coloring. |
Some data
Andreas Mitterecker
load(system.file("exampleData/slData.RData", package = "cn.farms")) load(system.file("exampleData/testSegments.RData", package = "cn.farms")) plotEvalIc(slData, fData(testSegments), variable = assayData(slData)$L_z[, 1], 23)