write_gmt {cmapR}R Documentation

Write a nested list to a GMT file

Description

Write a nested list to a GMT file

Usage

write_gmt(lst, fname)

Arguments

lst

the nested list to write. See details.

fname

the desired file name

Details

lst needs to be a nested list where each sub-list is itself a list with the following fields: - head: the name of the data - desc: description of the corresponding data - len: the number of data items - entry: a vector of the data items

Value

silently returns NULL

See Also

Visit http://clue.io/help for details on the GMT file format

Other CMap parsing functions: lxb2mat(), parse.gmt(), parse.gmx(), parse.grp(), write_grp()

Examples

## Not run: 
write_gmt(gene_set, "gene_set.gmt")

## End(Not run)


[Package cmapR version 1.6.0 Index]