parse_loc_object {clustifyr}R Documentation

more flexible parsing of single cell objects

Description

more flexible parsing of single cell objects

Usage

parse_loc_object(
  input,
  type = class(input),
  expr_loc = NULL,
  meta_loc = NULL,
  var_loc = NULL,
  cluster_col = NULL,
  lookuptable = NULL
)

Arguments

input

input object

type

look up predefined slots/loc

expr_loc

expression matrix location

meta_loc

metadata location

var_loc

variable genes location

cluster_col

column of clustering from metadata

lookuptable

if not supplied, will look in built-in table for object parsing

Value

list of expression, metadata, vargenes, cluster_col info from object

Examples

obj <- parse_loc_object(s_small3)
length(obj)

[Package clustifyr version 1.6.0 Index]