query_rank_bias {clustifyr} | R Documentation |
Query rank bias results
query_rank_bias(bias_list, id_mat, id_ref)
bias_list |
list of rank diff matrix between cluster and reference cell types |
id_mat |
name of cluster from average cluster matrix |
id_ref |
name of cell type in reference matrix |
data.frame rank diff values
avg <- average_clusters( mat = pbmc_matrix_small, metadata = pbmc_meta, cluster_col = "classified", if_log = FALSE ) rankdiff <- find_rank_bias( avg, cbmc_ref, query_genes = pbmc_vargenes ) qres <- query_rank_bias( rankdiff, "CD14+ Mono", "CD14+ Mono" )