assembleKmers {chromVAR}R Documentation

assembleKmers

Description

function to create de novo motifs from kmers based on deviations

Usage

assembleKmers(object, threshold = 1.5, p = 0.01, progress = TRUE)

Arguments

object

kmer chromVARDeviations object

threshold

variability threshold

p

p value threshold for inclusion of kmer

progress

show progress bar?

Details

function for assembling de novo kmers from kmer deviations

Value

list with (1) motifs: de novo motif matrices, (2) seed: seed kmer for de novo motif


[Package chromVAR version 1.16.0 Index]