annotationMatches {chromVAR} | R Documentation |
annotationMatches
annotationMatches(object) annotationMatches(object) <- value ## S4 method for signature 'SummarizedExperiment' annotationMatches(object) ## S4 replacement method for signature 'SummarizedExperiment' annotationMatches(object) <- value
object |
SummarizedExperiment with matches slot, see details |
value |
logical Matrix with annotation matches |
Will extract matrix from the "matches", "annotationMatches", or "motif_matches" assay of a SummarizedExperiment
logical matrix of annotation matches
Alicia Schep
# load annotation matrix; result from matchMotifs data(mini_ix, package = "chromVAR") matches <- annotationMatches(mini_ix)