annotationMatches {chromVAR}R Documentation

annotationMatches

Description

annotationMatches

Usage

annotationMatches(object)

annotationMatches(object) <- value

## S4 method for signature 'SummarizedExperiment'
annotationMatches(object)

## S4 replacement method for signature 'SummarizedExperiment'
annotationMatches(object) <- value

Arguments

object

SummarizedExperiment with matches slot, see details

value

logical Matrix with annotation matches

Details

Will extract matrix from the "matches", "annotationMatches", or "motif_matches" assay of a SummarizedExperiment

Value

logical matrix of annotation matches

Author(s)

Alicia Schep

Examples

# load annotation matrix; result from matchMotifs
data(mini_ix, package = "chromVAR")
matches <- annotationMatches(mini_ix)

[Package chromVAR version 1.16.0 Index]