assembleKmers {chromVAR} | R Documentation |
function to create de novo motifs from kmers based on deviations
assembleKmers(object, threshold = 1.5, p = 0.01, progress = TRUE)
object |
kmer chromVARDeviations object |
threshold |
variability threshold |
p |
p value threshold for inclusion of kmer |
progress |
show progress bar? |
function for assembling de novo kmers from kmer deviations
list with (1) motifs: de novo motif matrices, (2) seed: seed kmer for de novo motif