import_chimpipe {chimeraviz} | R Documentation |
A function that imports the results from a ChimPipe run, typically from a chimericJunctions_.txt file, into a list of Fusion objects.
import_chimpipe(filename, genome_version, limit)
filename |
Filename for the ChimPipe results. |
genome_version |
Which genome was used in mapping (hg19, hg38, etc.). |
limit |
A limit on how many lines to read. |
A list of Fusion objects.
chimpipefile <- system.file( "extdata", "chimericJunctions_MCF-7.txt", package="chimeraviz") fusions <- import_chimpipe(chimpipefile, "hg19", 3) # This should import a list of 3 fusions described in Fusion objects.