PerAndSpeed {cellmigRation} | R Documentation |
The PerAndSpeed() generates data and plots for persistence and speed.
PerAndSpeed( object, TimeInterval = 10, PtSplot = TRUE, AllPtSplot = TRUE, ApSplot = TRUE, AllApSplot = TRUE, export = FALSE, ExpName = NULL )
object |
|
TimeInterval |
A numeric value of the time elapsed between successive frames in the time-lapse stack. |
PtSplot |
A logical vector that allows generating individual plots of persistence time vs speed per cell. Default is TRUE. |
AllPtSplot |
A logical vector that allows generating a plot of persistence time vs speed for all cells. Default is TRUE. |
ApSplot |
A logical vector that allows generating individual plots of angular persistence vs speed per cell. Default is TRUE. |
AllApSplot |
A logical vector that allows generating a plot of angular persistence vs speed of all cells. Default is TRUE. |
export |
if 'TRUE' (default), exports function output |
ExpName |
string, indicates the name of the experiment. Can be NULL |
An CellMig class object with a data frame and plots. The data frame is stored in the PerAanSpeedtable slot.
Salim Ghannoum salim.ghannoum@medisin.uio.no
https://www.data-pulse.com/dev_site/cellmigration/
rmTD <- get(data(preProcCellMig)) rmTD <- PerAndSpeed(rmTD,TimeInterval=10, export=FALSE)