minNodes {categoryCompare} | R Documentation |
Deletes from the graph those annotations with less than a certain number of genes
minNodes(cwObj, cutoff)
cwObj |
a |
cutoff |
the minimum number of genes that an annotation must have |
Robert M Flight
CytoscapeWindowClass
ccOutCyt
## Not run: hasCy <- (if (.Platform$OS.type %in% "windows") { (length(grep("Cytoscape", system("tasklist", intern=TRUE))) > 0)}) if hasCy { data(ccData) ccResults$BP <- breakEdges(ccResults$BP, 0.8) cwObj <- ccOutCyt(ccResults$BP,ccOpts) minNodes(cwObj, 5) } ## End(Not run)