score_genes {cageminer} | R Documentation |
Score candidate genes and select the top n genes
score_genes(mined_candidates, hubs = NULL, tfs = NULL, pick_top = 10)
mined_candidates |
Data frame resulting from |
hubs |
Character vector of hub genes. |
tfs |
Character vector of transcription factors. |
pick_top |
Number of top genes to select. Default: 10. |
Data frame with top n candidates and their scores.
data(tfs) data(hubs) data(mined_candidates) set.seed(1) scored <- score_genes(mined_candidates, hubs$Gene, tfs$Gene_ID)