score_genes {cageminer}R Documentation

Score candidate genes and select the top n genes

Description

Score candidate genes and select the top n genes

Usage

score_genes(mined_candidates, hubs = NULL, tfs = NULL, pick_top = 10)

Arguments

mined_candidates

Data frame resulting from mine_candidates() or mine_step().

hubs

Character vector of hub genes.

tfs

Character vector of transcription factors.

pick_top

Number of top genes to select. Default: 10.

Value

Data frame with top n candidates and their scores.

Examples

data(tfs)
data(hubs)
data(mined_candidates)
set.seed(1)
scored <- score_genes(mined_candidates, hubs$Gene, tfs$Gene_ID)

[Package cageminer version 1.0.0 Index]