loadENCODEsamples {cTRAP} | R Documentation |
Samples are automatically downloaded if they are not found in the current working directory.
loadENCODEsamples(metadata, path = ".")
metadata |
Character: ENCODE metadata |
path |
Character: path where to download files |
List of loaded ENCODE samples
Other functions related with using ENCODE expression data:
downloadENCODEknockdownMetadata()
,
performDifferentialExpression()
,
prepareENCODEgeneExpression()
if (interactive()) { # Load ENCODE metadata for a specific cell line and gene cellLine <- "HepG2" gene <- c("EIF4G1", "U2AF2") ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene) # Load samples based on filtered ENCODE metadata loadENCODEsamples(ENCODEmetadata) }