prepareExpressionDrugSensitivityAssociation {cTRAP}R Documentation

Prepare gene expression and drug sensitivity correlation matrix

Description

Prepare gene expression and drug sensitivity correlation matrix

Usage

prepareExpressionDrugSensitivityAssociation(
  dataset = c("GDSC 7", "CTRP 2.1", "NCI60"),
  method = "spearman"
)

Arguments

dataset

Character: dataset to use (CTRP, GDSC or NCI60)

method

Character: correlation method to use between gene expression and drug sensitivity

Details

If path directs to non-existing files, data will be downloaded.

Value

Correlation matrix between gene expression and drug sensitivity


[Package cTRAP version 1.12.0 Index]