removeDoubleSCEs {breakpointR}R Documentation

Process double SCE chromosomes: with internal WC region.

Description

This function will take from a double SCE chromosome only WW or CC region (Longer region is taken).

Usage

removeDoubleSCEs(gr, collapseWidth = 5e+06)

Arguments

gr

A GRanges-class object.

collapseWidth

A segment size to be collapsed with neighbouring segments.

Value

The input GRanges-class object with only WW or CC region retained.


[Package breakpointR version 1.12.0 Index]