genotype.fisher {breakpointR} | R Documentation |
Assign states to any given region using Fisher Exact Test.
genotype.fisher(cReads, wReads, roiReads, background = 0.05, minReads = 10)
cReads |
Number of Crick reads. |
wReads |
Number of Watson reads. |
roiReads |
Total number of Crick and Watson reads. |
background |
The percent (e.g. 0.05 = 5%) of background reads allowed for WW or CC genotype calls. |
minReads |
The minimal number of reads between two breaks required for genotyping. |
A list
with the $bestFit and $pval.
David Porubsky, Aaron Taudt