plotBackgroundImageBeforeCorrection {blima} | R Documentation |
This function plots image of background distribution versus to foreground before background subtraction.
plotBackgroundImageBeforeCorrection(b, index, channelForeground = "GrnF", channelBackground = "GrnB", includePearson = FALSE)
b |
Single beadLevelData object. |
index |
Index of spot to generate. |
channelForeground |
Name of channel of foreground. |
channelBackground |
Name of channel of background. |
includePearson |
Include Pearson corelation. |
Vojtěch Kulvait
if(require("blimaTestingData") && interactive()) { #Write background images before correction. This function prints graph for condition D4. Call dev.off() to close. data(blimatesting) p = pData(blimatesting[[2]]@experimentData$phenoData) index = base::match("D4", p$Name) plotBackgroundImageBeforeCorrection(blimatesting[[2]], index) }else { print("To run this example, please install blimaTestingData package from bioconductor by running BiocManager::install('blimaTestingData')."); }