ps_plaque_16S {benchdamic}R Documentation

(Data) 60 Gingival Plaque samples of 16S rRNA (HMP 2012)

Description

A demonstrative purpose dataset containing microbial abundances for a total of 88 OTUs. The 60 Gingival Plaque paired samples belong to the Human Microbiome Project. This particular subset contains 30 Supragingival and 30 Subgingival Plaque samples from the SEX = "Male", RUN_CENTER = "WUCG", and VISITNO = "1" samples. It is possible to obtain the same dataset after basic filters (remove taxa with zero counts) and collapsing the counts to the genus level; HMP16SData Bioconductor package was used to download the data.

Usage

data(ps_plaque_16S)

Format

An object of class phyloseq


[Package benchdamic version 1.0.0 Index]