beadLevelData-class {beadarray} | R Documentation |
A class for storing red and green channel foreground and background intensities from an Illumina experiment.
Objects can be created by calls of the form new("beadLevelData")
, but are usually created by readIllumina
.
Objects of this class contain the following slots
beadData : | A list of arrays, indexed by array name. Each item in this list is itself a list, containing enviroments holding the data for that array. |
sectionData : | a list containing information. Each item in the list is a data frame containing one row for each section |
experimentData : | a list containing the annotation of the platform, link to the sdf file and type of data (slide or Sentrix Array Matrix) |
history : | Character vector storing the operations performed on this object. |
Printing method for BeadLevelList
sectionNames(object,arrays=NULL)
Returns the strip/array names from a
numBeads(object,arrays=NULL)
Returns the number of beads on selected arrays
getBeadData
retrieve data
insertBeadData
Input or modify existing data
Mark Dunning, Mike Smith
if(require(beadarrayExampleData)){ data(exampleBLData) sectionNames(exampleBLData) head(exampleBLData[[1]]) getBeadData(exampleBLData, array=1, what="Grn")[1:10] }