guess_maxquant_quantity {autonomics} | R Documentation |
character vector, dataframe, or SummarizedExperiment.
guess_maxquant_quantity(x, ...) ## S3 method for class 'character' guess_maxquant_quantity(x, ...) ## S3 method for class 'data.frame' guess_maxquant_quantity(x, ...) ## S3 method for class 'SummarizedExperiment' guess_maxquant_quantity(x, ...)
x |
character vector, dataframe, or SummarizedExperiment |
... |
used for proper S3 method dispatch |
string: value from names(MAXQUANT_PATTERNS_QUANTITY)
# file file <- download_data('fukuda20.proteingroups.txt') guess_maxquant_quantity(file) # character vector x <- "Ratio M/L normalized STD(L)_E00(M)_E01(H)_R1" guess_maxquant_quantity(x) x <- "Ratio M/L STD(L)_E00(M)_E01(H)_R1" guess_maxquant_quantity(x) x <- "LFQ intensity E00.R1" guess_maxquant_quantity(x) x <- "Reporter intensity corrected 0 STD(0)E00(1)E01(2)_R1" guess_maxquant_quantity(x) x <- "Reporter intensity 0 STD(0)E00(1)E01(2)_R1" guess_maxquant_quantity(x) x <- "Intensity H STD(L)_E00(M)_E01(H)_R1" guess_maxquant_quantity(x) # dataframe file <- download_data('fukuda20.proteingroups.txt') x <- data.table::fread(file) guess_maxquant_quantity(x) # SummarizedExperiment file <- download_data('fukuda20.proteingroups.txt') object <- read_proteingroups(file, plot=FALSE) guess_maxquant_quantity(file)