make_volcano_dt {autonomics}R Documentation

Create volcano datatable

Description

Create volcano datatable

Usage

make_volcano_dt(
  object,
  fit,
  contrastdefmat = contrastdefs(object)[[1]],
  ntop = 3
)

Arguments

object

SummarizedExperiment

fit

'limma', 'lme', 'lm', 'wilcoxon'

contrastdefmat

contrastdef matrix

ntop

no of top features to be annotated

Value

data.table

Examples

file <- download_data('fukuda20.proteingroups.txt')
object <- read_proteingroups(file, fit='limma', plot=FALSE)
make_volcano_dt(object, fit = 'limma')

[Package autonomics version 1.2.0 Index]