download_data {autonomics}R Documentation

Download autonomics example data

Description

Download autonomics example data

Usage

download_data(
  filename,
  url = paste0("https://bitbucket.org/graumannlabtools/autonomics/downloads/",
    filename),
  verbose = TRUE
)

Arguments

filename

file name

url

web url

verbose

TRUE / FALSE

Value

local file path

Examples

# atkin18 - hypoglycemia - pubmed 30525282
    download_data('atkin18.somascan.adat')          # somascan  intensities
    download_data('atkin18.metabolon.xlsx')         # metabolon intensities

# billing16 - stemcell characterization - pubmed 26857143
    download_data('billing16.proteingroups.txt')  # proteingroup ratios
    download_data('billing16.somascan.adat')      # somascan  intensities
    download_data('billing16.rnacounts.txt')      # rnaseq    counts
    download_data('billing16.bam.zip')            # rnaseq    alignments

# billing19 - stemcell differentiation - pubmed 31332097
    # download_data('billing19.proteingroups.txt')    # proteingroup ratios
    # download_data('billing19.phosphosites.txt')     # phosphosite  ratios
    # download_data('billing19.rnacounts.txt')        # rnaseq       counts

# fukuda20 - heart regeneration - pubmed PXD016235
    download_data('fukuda20.proteingroups.txt')     # proteingroup LFQ

# halama18 - glutaminase inhibition - pubmed 30525282
    download_data('halama18.metabolon.xlsx')        # metabolon intensities

[Package autonomics version 1.2.0 Index]