log2tpm {autonomics}R Documentation

Get/Set log2tpm

Description

Get / Set log2tpm matrix

Usage

log2tpm(object)

## S4 method for signature 'SummarizedExperiment'
log2tpm(object)

log2tpm(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,matrix'
log2tpm(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,numeric'
log2tpm(object) <- value

Arguments

object

SummarizedExperiment

value

log2tpm matrix (features x samples)

Value

log2tpm matrix (get) or updated object (set)

Examples

file <- download_data('billing19.rnacounts.txt')
object <- read_rnaseq_counts(file, plot=FALSE)
log2tpm(object) <- values(object)
log2tpm(object)[1:3, 1:3]

[Package autonomics version 1.2.0 Index]