merge_sdata {autonomics}R Documentation

Merge sample/feature data

Description

Merge sample/feature data

Usage

merge_sdata(
  object,
  dt,
  by.x = "sample_id",
  by.y = names(dt)[1],
  verbose = TRUE
)

merge_fdata(
  object,
  dt,
  by.x = "feature_id",
  by.y = names(dt)[1],
  verbose = TRUE
)

Arguments

object

SummarizedExperiment

dt

data.frame, data.table, DataFrame

by.x

object mergevar

by.y

df mergevar

verbose

TRUE/FALSE

Value

SummarizedExperiment

Examples

require(magrittr)
file <- download_data('halama18.metabolon.xlsx')
object <- read_metabolon(file, plot=FALSE)
object %<>% merge_sdata( data.frame(sample_id = object$sample_id,
                                    number = seq_along(object$sample_id)))
head(sdata(object))

[Package autonomics version 1.2.0 Index]