anota2seqGetQualityControl {anota2seq}R Documentation

Retrieve the anota2seqPerformQC output from the Anota2seqDataSet

Description

Retrieves the anota2seqPerformQC output from the Anota2seqDataSet

Usage

anota2seqGetQualityControl(object)

## S4 method for signature 'Anota2seqDataSet'
anota2seqGetQualityControl(object)

Arguments

object

An Anota2seqDataSet.

Value

The function outputs a list containing the following data:

See Also

See Also as anota2seqPerformQC

Examples


data(anota2seq_data)
#Initialize Anota2seqDataSet
Anota2seqDataSet <- anota2seqDataSetFromMatrix(
    dataP = anota2seq_data_P[1:100,],
    dataT = anota2seq_data_T[1:100,],
    phenoVec = anota2seq_pheno_vec,
    dataType = "RNAseq",
    normalize = TRUE)
#Run QC
Anota2seqDataSet <- anota2seqPerformQC(Anota2seqDataSet)

#Get QC
qc <- anota2seqGetQualityControl(Anota2seqDataSet)


[Package anota2seq version 1.16.0 Index]