build_gene_annots {annotatr} | R Documentation |
Using the TxDb.*
group of packages, construct genic annotations consisting of any combination of 1-5kb upstream of a TSS, promoters (< 1kb from TSS), 5UTRs, CDS, exons, first exons, introns, intron/exon and exon/intron boundaries, 3UTRs, and intergenic.
build_gene_annots( genome = annotatr::builtin_genomes(), annotations = annotatr::builtin_annotations() )
genome |
The genome assembly. |
annotations |
A character vector with entries of the form |
A list of GRanges
objects with unique id
of the form [type]:i
, tx_id
being the UCSC knownGene transcript name, gene_id
being the Entrez Gene ID, symbol
being the gene symbol from the Entrez ID to symbol mapping in org.db
for that species, and type
being the annotation type.