aafPathway-class {annaffy} | R Documentation |
An abstraction for KEGG pathway ids from Bioconductor data
packages. This class is actually extends aafList
and holds
aafPathwayItem
objects which have the actual annotation
data.
Objects are generally created by the aafPathway
constructor.
Objects can also be created manually by calls of the form
new("aafPathway", list(pathwayitems))
.
.Data
:Object of class list
Class aafList
, from data part.
(aafGO): Returns a comma delimeted list of the individual
aafPathwayItem
objects.
(aafGO): Returns zero length character vector because this method is not valid for this class.
(aafGO): Returns an HTML representation of each of the
individual aafPathwayItem
objects, concatenated together.
(aafGO): Returns an HTML table cell representation with the class set to "aafPathway".
(aafGO): Returns a line of CSS which intends PathwayItem paragraphs.
Colin A. Smith, annaffy@colinsmith.org
aafPathway, aafPathwayItem, aafList