lookupAlignment {amplican} | R Documentation |
Prints alignments in blast-like style for human examination.
lookupAlignment(x, ID, read_id = 1)
x |
(AlignmentsExperimentSet) |
ID |
(string) Experiment Identifier |
read_id |
(numeric) Read Identifier. Reads are sorted by frequency. Defaults to 1, most abundant read. |
(print to view)
# load example object file_path <- system.file("extdata", "results", "alignments", "AlignmentsExperimentSet.rds", package = "amplican") aln <- readRDS(file_path) # look at most frequent reads aligned from experiment ID_1 lookupAlignment(aln, "ID_1")