summaryAllelicRatio {airpart}R Documentation

Allelic ratio summary

Description

Oroduce allelic ratio summaries for each gene cluster

Usage

summaryAllelicRatio(sce, genecluster)

Arguments

sce

SingleCellExperiment

genecluster

an optional vector of gene cluster IDs. if nothing is given, all cluster's summaries will be calculated

Value

a list of gene cluster summary tables containing:

Examples


library(S4Vectors)
sce <- makeSimulatedData()
sce <- preprocess(sce)
sce <- geneCluster(sce, G = 1:4)
summary <- summaryAllelicRatio(sce, genecluster = c(1, 3))
summary

[Package airpart version 1.2.0 Index]