test_exposureAffected {YAPSA} | R Documentation |
Test significance of association between a vector of exposures and a
selection of samples, e.g. those affected by mutations in a pathway as
returned by find_affected_PIDs
test_exposureAffected( in_exposure_vector, in_affected_PIDs, in_mutation_label = NULL, in_exposure_label = NULL )
in_exposure_vector |
Named vector of a phenotype (e.g. exposures to a specific signature) |
in_affected_PIDs |
Character vector of samples affected by some
criterion, e.g. mutations in a pathway as returned by
|
in_mutation_label |
If non-NULL, prefix to the mutation status (x-axis label) in the produced boxplot |
in_exposure_label |
If non-NULL, prefix to the exposures (y-axis label) in the produced boxplot |
A list with entries:
current_kruskal
: Kruskal
test object from testing phenotype against affection
current_boxplot
: Boxplot of phenotype against affection
NULL