compare_SMCs {YAPSA} | R Documentation |
Compare all strata from different orthogonal stratification axes, i.e. othogonal SMCs by cosine similarity of signature exposures. First calls
make_strata_df
, then
plot_strata
and finally
compare_SMCs( in_stratification_lists_list, in_signatures_ind_df, output_path, in_nrect = 5, in_attribute = "" )
in_stratification_lists_list |
List of lists with entries from different (orthogonal) stratification axes or SMCs |
in_signatures_ind_df |
A data frame containing meta information about the signatures |
output_path |
Path to directory where the results, especially the figure
produced by |
in_nrect |
Number of clusters in the clustering procedure provided by
|
in_attribute |
Additional string for the file name where the figure
produced by |
The comparison matrix of cosine similarities.
NULL