seqAlphabetFrequency {XNAString}R Documentation

Create set of functions and methods to calculate alphabet frequency in base, sugar and backbone slots

Description

Create set of functions and methods to calculate alphabet frequency in base, sugar and backbone slots

Usage

seqAlphabetFrequency(unique_letters, seq, as.prob)

Arguments

unique_letters

string (or character) - these letters pose column names

seq

string (or character) - frequency is calculated for this string

as.prob

logical - if TRUE frequency returned as probability of occurrence

Value

numeric - named numeric vector

Examples

seqAlphabetFrequency(c("A", "B", "C"), c("AABA"), as.prob = FALSE)

[Package XNAString version 1.2.2 Index]