XNAStringFromHelm {XNAString} | R Documentation |
Create XNAString object from HELM - user interface
XNAStringFromHelm( helm, name = NA_character_, dictionary = xna_dictionary, compl_dictionary = complementary_bases, remove_linker = TRUE )
helm |
string (or strings vector) with HELM sequence, which contains one RNA polymer and optionally CHEM element |
name |
character (or character vector) |
dictionary |
data.table with following columns: "HELM", "type", "symbol". By default internal XNAString dictionary is used. |
compl_dictionary |
data.table with following columns: "base", "target". By default internal XNAString dictionary is used |
remove_linker |
logical defines if linker should be clipped from RNA |
XNAString object if single helm, XNAStringSet object otherwise
Marianna Plucinska
XNAStringFromHelm("RNA1{[dR](A)P.[dR](A)P.[dR](A)}$$$$V2.0") XNAStringFromHelm("RNA1{[dR](A)P.[dR](A)P.[dR](A)}$$$$V2.0", 'name') XNAStringFromHelm(c("RNA1{[dR](A)P.[dR](A)P.[dR](A)}$$$$V2.0", "RNA1{[dR](T)P.[dR](T)P.[dR](A)}$$$$V2.0"), c('name1', 'name2'))