plotFootprint {VplotR} | R Documentation |
This function takes paired-end fragments, extract the "cuts" (i.e. extremities) and plot the footprint profile over a set of GRanges.
plotFootprint( frags, targets, split_strand = FALSE, plot_central = TRUE, xlim = c(-75, 75), bin = 1, verbose = 1 )
frags |
GRanges, the paired-end fragments |
targets |
GRanges, the loci to map the fragments onto |
split_strand |
Boolean, should the + and - strand be splitted? |
plot_central |
plot grey rectangle over the loci |
xlim |
numeric vector of length 2, the x limits of the computed Vmat |
bin |
Integer, bin used to smooth the gootprint profile |
verbose |
Integer |
A footprint ggplot
data(bam_test) data(ce11_proms) plotFootprint(bam_test, ce11_proms)