showAvailable {VariantExperiment} | R Documentation |
The function to show the available entries for the arguments within
makeVariantExperimentFromGDS
showAvailable( file, args = c("assayNames", "rowDataColumns", "colDataColumns", "infoColumns"), ftnode, smpnode )
file |
the path to the gds.class file. |
args |
the arguments in |
ftnode |
the node name for feature id (e.g., "variant.id",
"snp.id", etc.). Must be provided if the file format is not
|
smpnode |
the node name for sample id (e.g.,
"sample.id"). Must be provided if the file format is not
|
## snp gds file gds <- SNPRelate::snpgdsExampleFileName() showAvailable(gds) ## sequencing gds file gds <- SeqArray::seqExampleFileName("gds") showAvailable(gds)