calculateMaxEntScanScore {VarCon} | R Documentation |
This function calculates the MaxEntScan score of either splice donor or acceptor sequences.
calculateMaxEntScanScore(seqVector, ssType)
seqVector |
Character vector of nucleotide sequence of a splice site sequences. SA sequences should be 23nt long (20 intronic, 3 exonic) and splice donor sequences should be 9nt long (3 exonic, 6 intronic) only contain bases "A", "G", "C", "T". |
ssType |
Numeric indicator, if the entred sequence is a splice donor (5) or acceptor (3) |
Character vector of the MaxEntScan scores generated from the entered seqVector
.
calculateMaxEntScanScore("TTCCAAACGAACTTTTGTAGGGA",3) calculateMaxEntScanScore("GAGGTAAGT",5)