TransitionParam {VanillaICE} | R Documentation |
Contains parameters for computing transition probabilities
TransitionParam(taup = 1e+10, taumax = 1 - 5e+06) ## S4 method for signature 'TransitionParam' show(object)
taup |
length-one numeric vector |
taumax |
The maximum probability that the current state is the same as the preceding state. See details |
object |
a |
Diagonal elements of the transition probability matrix are
computed as e^-2*d/taup, where d is the distance between markers
i and i-1 and taup
is typically in the range of 1xe10. This
probability is constrained to be no larger than taumax
. The
probabilities on the off-diagonal elements are the same and are
subject to the constraint that the rows of the transition
probability matrix sum to 1.
TransitionParam() ## higher values of taup make transitions between states less likely TransitionParam(taup=1e12)