dim,VCFArraySeed-method {VCFArray} | R Documentation |
dim
, dimnames
: dimension and dimnames of
object contained in the VCF file.
vcffile
: extract the VcfFile
object
corresponding to the backend VCF file.
rowRanges
: extract the rowRanges
information from the backend VCF file.
## S4 method for signature 'VCFArraySeed' dim(x) ## S4 method for signature 'VCFArraySeed' dimnames(x) vcffile(x) ## S4 method for signature 'VCFArraySeed' vcffile(x) ## S4 method for signature 'VCFArraySeed' rowRanges(x) ## S4 method for signature 'VCFArraySeed' show(object) ## S4 method for signature 'VCFArray' vcffile(x) ## S4 method for signature 'VCFArray' rowRanges(x)
x |
the |
object |
the |
dim
: the integer vector of dimensions for
VCFArray
or VCFArraySeed
objects.
dimnames
: the unnamed list of dimension names for
VCFArray
and VCFArraySeed
objects.
vcffile
: the VcfFile
object corresponding to
the backend VCF file.
fl <- system.file("extdata", "chr22.vcf.gz", package="VariantAnnotation") va <- VCFArray(fl, name = "GT") dim(va) dimnames(va) vcffile(va) seed(va) dim(seed(va)) DelayedArray::type(va)