plotInteractionsUMI4C {UMI4Cats} | R Documentation |
Plot the results of callInteractions
together with the gene
annotation and the trend.
plotInteractionsUMI4C( umi4c, gr_interactions, grouping = "condition", significant = TRUE, colors = NULL, xlim = NULL, ylim = NULL, TxDb = TxDb.Hsapiens.UCSC.hg19.knownGene::TxDb.Hsapiens.UCSC.hg19.knownGene, longest = TRUE, rel_heights = c(0.25, 0.5, 0.25), font_size = 14 )
umi4c |
|
gr_interactions |
GRangesList outputed by |
grouping |
Grouping used for the different samples. If none available or
want to add new groupings, run |
significant |
Logical indicating whether to plot only significant interactions (default: TRUE). |
colors |
Named vector of colors to use for plotting for each group. |
xlim |
Limits for the plot x axis (genomic coordinates). |
ylim |
Limits of the trend y axis. |
TxDb |
TxDb object to use for drawing the genomic annotation. |
longest |
Logical indicating whether to plot only the longest transcripts for each gene in the gene annotation plot. |
rel_heights |
Numeric vector of length 3 or 4 (if differential plot) indicating the relative heights of each part of the UMI4C plot. |
font_size |
Base font size to use for the UMI4C plot. Default: 14. |
Combined plot with gene annotation, trend and interaction plot.