addGrouping {UMI4Cats} | R Documentation |
This function can be used to add specific groupings to UMI4C
objects.
addGrouping( umi4c, grouping = "sampleID", scales = 5:150, normalized = TRUE, sd = 2 )
umi4c |
|
grouping |
Name of the column in colData used to merge the samples or replicates. Set to NULL for skipping grouping. Default: "condition". |
scales |
Numeric vector containing the scales for calculating the domainogram. |
normalized |
Logical indicating whether UMI-4C profiles should be
normalized to the |
sd |
Stantard deviation for adaptative trend. |
Adds a new UMI4C
object into the groupsUMI4C
slot with
samples grouped according to grouping
variable.
data("ex_ciita_umi4c") ex_ciita_umi4c <- addGrouping(ex_ciita_umi4c, grouping="condition")