plotTimeSeries {TimeSeriesExperiment} | R Documentation |
Plotting expression over time for selected genes curve and colors correspond to distinct groups.
plotTimeSeries( object, features = rownames(object), trans = FALSE, smooth = TRUE, ncol = 5, scales = "free" )
object |
A |
features |
A vector of names of selected features to plot. |
trans |
A boolean indicating whether (TRUE) transformed, variance stabilized, assay values should be printed or (FALSE) just normalized by sample depth. |
smooth |
If TRUE a smoothed line is plotted for each gene and each group, else a piecewise linear average (over replicates) curve is plotted. |
ncol |
An integer indicating the number of columns for facetting. Default is 5. |
scales |
character scalar indecating facet scales, by default "free". |
list of ggplot objects
data("endoderm_small") feat_to_plot <- rownames(endoderm_small)[1:10] plotTimeSeries(endoderm_small, features = feat_to_plot, smooth = FALSE)