summaryFeatureLev {TarSeqQC} | R Documentation |
Explore the TargetExperiment and TargetExperimentList's attribute values at feature and/or gene level.
summaryFeatureLev(object) ## S4 method for signature 'TargetExperiment' summaryFeatureLev(object) summaryGeneLev(object) ## S4 method for signature 'TargetExperiment' summaryGeneLev(object) ## S4 method for signature 'TargetExperiment' summary(object, ...) summaryIntervals(object, attributeThres = c(0, 1, 50, 200, 500, Inf), pool = FALSE) ## S4 method for signature 'TargetExperiment' summaryIntervals(object, attributeThres = c(0, 1, 50, 200, 500, Inf), pool = FALSE) ## S4 method for signature 'TargetExperimentList' summary(object, ...) ## S4 method for signature 'TargetExperimentList' summaryIntervals(object, attributeThres = c(0, 1, 50, 200, 500, Inf), pool = FALSE)
object |
TargetExperiment/TargetExperimentList class object. |
... |
required by summary. |
attributeThres |
numeric indicating the intervals extreme values required by summaryIntervals. |
pool |
logical indicating if the summary should be performed for each pool separately |
according to the call one of the following objects can be returned
data.frame |
statistics of the analyzed attribute |
data.frame |
Frequency table of the feature occurrence in the selected intervals |
see full example in TargetExperiment-class
see full example in TargetExperimentList-class
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar
## Loading the TargetExperiment object data(ampliPanel, package="TarSeqQC") # Summary at feature level summaryFeatureLev(ampliPanel) # Summary at gene level summaryGeneLev(ampliPanel) # Defining the attribute interval extreme values attributeThres<-c(0,1,50,200,500, Inf) # Doing a frequency table for the attribute intervals summaryIntervals(ampliPanel, attributeThres=attributeThres) ## Loading the TargetExperimentList object data(TEList, package="TarSeqQC") # Object summary summary(TEList) # Defining the attribute interval extreme values attributeThres<-c(0,1,50,200,500, Inf) # Doing a frequency table for the attribute intervals summaryIntervals(TEList, attributeThres=attributeThres)