as.stages {TRONCO}R Documentation

as.stages

Description

Return the association sample -> stage, if any. Input 'x' should be a TRONCO compliant dataset - see is.compliant.

Usage

as.stages(x)

Arguments

x

A TRONCO compliant dataset.

Value

A matrix with 1 column annotating stages and rownames as sample IDs.

Examples

data(test_dataset)
data(stage)
test_dataset = annotate.stages(test_dataset, stage)
as.stages(test_dataset)


[Package TRONCO version 2.26.0 Index]