export.mutex {TRONCO} | R Documentation |
Create an input file for MUTEX (ref: https://code.google.com/p/mutex/ )
export.mutex( x, filename = "tronco_to_mutex", filepath = "./", label.mutation = "SNV", label.amplification = list("High-level Gain"), label.deletion = list("Homozygous Loss") )
x |
A TRONCO compliant dataset. |
filename |
The name of the file |
filepath |
The path where to save the file |
label.mutation |
The event type to use as mutation |
label.amplification |
The event type to use as amplification (can be a list) |
label.deletion |
The event type to use as amplification (can be a list) |
A MUTEX example matrix
data(crc_gistic) dataset = import.GISTIC(crc_gistic) export.mutex(dataset)