computeESTIMATEscore {TNBC.CMS}R Documentation

Computation of stromal and immune scores

Description

Computes stromal and immune scores. This function was borrowed from the estimate package and changed to accept R object as input.

Usage

computeESTIMATEscore(mat)

Arguments

mat

A matrix of gene expression with genes in rows and samples in columns (rownames corresopnding to gene symbol).

Value

A data frame containing stromal and immune scores


[Package TNBC.CMS version 1.10.0 Index]