predictCMS {TNBC.CMS} | R Documentation |
TNBC consensus molecular subtype prediction
Description
Predicts the TNBC consensus molecular subtype of TNBC samples.
Usage
predictCMS(expr)
Arguments
expr |
A SummarizedExperiment object or a matrix containig gene
expression profiles. If input is a SummarizedExperiment , the first
element in the assays list should be a matrix of gene expression.
Rows and columns of the gene expression matrix correspond to genes and
samples, respectively (rownames must be to gene symbols).
|
Value
A vector of assigned subtypes.
Examples
# Load gene expression profiles of TNBC samples
data(GSE25055)
# Predict consensus molecular subtypes of TNBC samples
prediction <- predictCMS(expr = GSE25055)
table(prediction)
[Package
TNBC.CMS version 1.10.0
Index]