TFCatalog {TFutils}R Documentation

Constructor for TFCatalog

Description

Constructor for TFCatalog

Usage

TFCatalog(name, nativeIds, HGNCmap, metadata)

Arguments

name

informative character(1) for collection

nativeIds

character() vector of identifiers used by collection creators

HGNCmap

data.frame with column 1 nativeIds, column 2 HGNC or hgnc.heur for MSigDb and any other columns of use

metadata

a list of metadata elements

Value

instance of TFCatalog

Examples

if (require("GSEABase")) {
 TFs_MSIG = TFCatalog(name="MsigDb.TFT",nativeIds=names(TFutils::tftColl),
 HGNCmap=data.frame(TFutils::tftCollMap,stringAsFactors=FALSE))
 TFs_MSIG
}

[Package TFutils version 1.14.0 Index]