tffamCirc.prep {TFutils}R Documentation

set up list of pfms in motifStack protocol

Description

set up list of pfms in motifStack protocol

Usage

tffamCirc.prep(tffam = "Paired-related HD factors{3.1.3}", trimfac = 0.4)

Arguments

tffam

character(1) name of TF family as found in TFutils::hocomoco.mono field TF family

trimfac

fraction passed as parameter t to motifStack::trimMotif

Value

a list of pfm instances as defined in motifStack

Note

Uses MotifDb, motifStack to create a list of pfms

Examples

n1 = tffamCirc.prep()
str(n1)

[Package TFutils version 1.14.0 Index]