TFCatalog {TFutils} | R Documentation |
Constructor for TFCatalog
TFCatalog(name, nativeIds, HGNCmap, metadata)
name |
informative character(1) for collection |
nativeIds |
character() vector of identifiers used by collection creators |
HGNCmap |
data.frame with column 1 nativeIds, column 2 HGNC or hgnc.heur for MSigDb and any other columns of use |
metadata |
a list of metadata elements |
instance of TFCatalog
if (require("GSEABase")) { TFs_MSIG = TFCatalog(name="MsigDb.TFT",nativeIds=names(TFutils::tftColl), HGNCmap=data.frame(TFutils::tftCollMap,stringAsFactors=FALSE)) TFs_MSIG }