topTraitsOfTargets {TFutils} | R Documentation |
Use MSigDB TF targets resource to find targets of input TF and find traits to which these targets have been mapped
topTraitsOfTargets(TFsym, gsc, gwcat, ntraits = 6, force = FALSE, ...)
TFsym |
character(1) symbol for a TF must be present in |
gsc |
an instance of |
gwcat |
instance of |
ntraits |
numeric(1) number of traits to report |
force |
logical see note, set to true if you want to skip mapping from TFsym to a specific motif or TF identifier used as name of a GeneSet in gsc |
... |
character() vector of fields in mcols(gwcat) to include |
data.frame
symbol, set force = TRUE to use a known 'motif' name among names(gsc)
If tftCollMap[, "hgnc.heur"]
does not possess the necessary
suppressPackageStartupMessages({ library(GSEABase) }) # more results if you substitute ebicat37 from gwascat below topTraitsOfTargets("MTF1" , tftColl, gwascat_hg19_chr17)