get_rslocs_38 {TFutils}R Documentation

utility to obtain location etc. for rsids of SNPs

Description

utility to obtain location etc. for rsids of SNPs

Usage

get_rslocs_38(rsids = c("rs6060535", "rs56116432"))

Arguments

rsids

character vector of dbSNP identifiers

Value

GRanges instance

Note

Uses rest.ensembl.org, posting to variant_recorder/homo_sapiens. Parses result minimally, using only the first SPDI to obtain location information, adding 1 as ensembl genomic coordinates are zero-based.

Examples

if (interactive()) get_rslocs_38() # see https://stat.ethz.ch/pipermail/bioc-devel/2020-October/017263.html

[Package TFutils version 1.14.0 Index]