TFtargs {TFutils} | R Documentation |
gadget to help sort through tags naming TFs
TFtargs( gscoll = TFutils::tftColl, initTF = "VDR_Q3", gwcat = TFutils::gwascat_hg19_chr17, gadtitle = "Search for a TF; its targets will be checked for mapped status in GWAS catalog" )
gscoll |
a GSEABase GeneSetCollection |
initTF |
character(1) initial TF string for app |
gwcat |
GRanges-like structure with GWAS catalog information |
gadtitle |
character(1) a title for the gadget panel |
on app conclusion a data.frame is returned
Will use TFutils::gwascat_hg19_chr17 to look for 'MAPPED_GENE' field entries matching targets, also hardcoded to use org.Hs.eg.db to map symbols
if (interactive()) TFtargs()