makeTFBSmatrix {TFEA.ChIP}R Documentation

Function to search for a list of entrez gene IDs.

Description

Function to search for a list of entrez gene IDs in a TF-gene binding data base.

Usage

makeTFBSmatrix(GeneList, id_db, geneSetAsInput = TRUE)

Arguments

GeneList

Array of gene Entrez IDs

id_db

TF - gene binding database.

geneSetAsInput

TRUE for lists of GeneSet objects, FALSE for lists of vectors.

Value

1/0 matrix. Each row represents a gene, each column, a ChIP-Seq file.

Examples

data('tfbs.database','Entrez.gene.IDs',package = 'TFEA.ChIP')
makeTFBSmatrix(Entrez.gene.IDs,tfbs.database)

[Package TFEA.ChIP version 1.14.0 Index]