GE_matrix {StarBioTrek}R Documentation

Get human KEGG pathway data and a gene expression matrix in order to obtain a list with the gene expression for only pathways given in input .

Description

GE_matrix creates a list of gene expression for pathways given by the user.

Usage

GE_matrix(DataMatrix, genes.by.pathway)

Arguments

DataMatrix

gene expression matrix (eg.TCGA data)

genes.by.pathway

a list of pathway data as provided by GetData and ConvertedID_genes

Value

a list for each pathway ( gene expression level belong to that pathway)

Examples

list_path_gene<-GE_matrix(DataMatrix=tumo[,1:2],genes.by.pathway=pathway[1:5])

[Package StarBioTrek version 1.20.0 Index]