createVisiumSCE {Spaniel} | R Documentation |
A function to select to import 10X data into an SCE object
createVisiumSCE(tenXDir = "../outs", resolution = "Low")
tenXDir |
The path to Space Ranger outs directory containing spatial directory and filtered_feature_bc_matric |
resolution |
Resolution of the tissue image to be used for plotting. Can be either "High", or "Low". Default is "Low". |
SingleCellExperimentObject
tenXDir <- file.path(system.file(package = "Spaniel"), "extdata/outs") sce <- createVisiumSCE(tenXDir, resolution = "Low")