createVisiumSCE {Spaniel}R Documentation

createVisiumSCE

Description

A function to select to import 10X data into an SCE object

Usage

createVisiumSCE(tenXDir = "../outs", resolution = "Low")

Arguments

tenXDir

The path to Space Ranger outs directory containing spatial directory and filtered_feature_bc_matric

resolution

Resolution of the tissue image to be used for plotting. Can be either "High", or "Low". Default is "Low".

Value

SingleCellExperimentObject

Examples

tenXDir <- file.path(system.file(package = "Spaniel"), "extdata/outs")
sce <- createVisiumSCE(tenXDir, resolution = "Low")



[Package Spaniel version 1.8.0 Index]