ConversionRate {SingleMoleculeFootprinting}R Documentation

Conversion rate

Description

calculate sequencing library conversion rate on a chromosome of choice

Usage

ConversionRate(sampleSheet, genome, chr = 19, clObj = NULL)

Arguments

sampleSheet

QuasR sample sheet

genome

BS genome

chr

chromosome to calculate conversion rate on (default: 19)

clObj

cluster object to emply for parallel processing created using the parallel::makeCluster function. Defaults to NULL

Value

Conversion rate

Examples

Qinput = paste0(tempdir(), "/NRF1Pair_Qinput.txt")
library(BSgenome.Mmusculus.UCSC.mm10)

if(file.exists(Qinput)){
    # DO NOT RUN
    # clObj = parallel::makeCluster(5)
    # ConversionRatePrecision = ConversionRate(sampleSheet = Qinput, genome = BSgenome.Mmusculus.UCSC.mm10, chr = 19, clObj = clObj)
    # parallel::stopCluster(clObj)
}


[Package SingleMoleculeFootprinting version 1.2.0 Index]