GSEAresultTable {SeqGSEA} | R Documentation |
Form a table for GSEA results.
GSEAresultTable(gene.set, GSDesc = FALSE)
gene.set |
a SeqGeneSet object after running |
GSDesc |
logical indicating whether to output gene set descriptions. default: FALSE |
A data frame containing columns of GSName, GSSize, ES, ES.pos, pval, FDR, and FWER.
Xi Wang, xi.wang@newcastle.edu.au
data(DEscore, package="SeqGSEA") data(DSscore, package="SeqGSEA") gene.score <- geneScore(DEscore, DSscore, method="linear", DEweight = 0.3) data(DEscore.perm, package="SeqGSEA") data(DSscore.perm, package="SeqGSEA") gene.score.perm <- genePermuteScore(DEscore.perm, DSscore.perm, method="linear", DEweight=0.3) data(GS_example, package="SeqGSEA") GS_example <- GSEnrichAnalyze(GS_example, gene.score, gene.score.perm) head(GSEAresultTable(GS_example))