GetKnnDe {Sconify} | R Documentation |
Obtain a density estimation derived from the original manifold, avoiding the lossiness of lower dimensional embeddings
GetKnnDe(nn.matrix)
nn.matrix |
A list of 2, where the first is a matrix of nn indices, and the second is a matrix of nn distances |
a vector where each element is the KNN-DE for that given cell, ordered by row number, in the original input matrix of cells x features
ex.knn <- Fnn(wand.combined, input.markers, k = 30) GetKnnDe(ex.knn)