extractModules {SMITE} | R Documentation |
Having identfied modules within a Pvalue annotation, this function allows the user to display 1 or more of the module genes.
extractModules(pvalue_annotation, which_module = NULL)
pvalue_annotation |
An S4 object of class PvalueAnnotation for which Spinglass or BioNet has already been run. |
which_module |
A numeric vector specifying one or more module to display |
A list with each element containing the requested modules
N. Ari Wijetunga
plotModule runGOseq extractGOseq runSpinglass runBioNet
data(test_annotation_score_data) extractModules(pvalue_annotation=test_annotation, which_module=1)