SDAMS-package {SDAMS} | R Documentation |
SDAMS is an R package for differential abundance/expression analysis of
metabolomics, proteomics and single-cell RNA sequencing data, and the main
function for differential abundance/expression analysis
is SDA
. See the examples at SDA
for
basic analysis steps. SDAMS considers a two-part model, a logistic regression
for the zero proportion and a semi-parametric log-linear model for the
non-zero values.
Yuntong Li <yuntong.li@uky.edu>, Chi Wang <chi.wang@uky.edu>, Li Chen <lichenuky@uky.edu>
Li, Y., Fan, T.W., Lane, A.N. et al. SDA: a semi-parametric differential abundance analysis method for metabolomics and proteomics data. BMC Bioinformatics 20, 501 (2019).